The centre was established in 1990 to serve as biodiversity conservation icon and environment education centre. The facility was built by the Chevron Corporation for the Nigerian Conservation Foundation (NCF), as a reserved sanctuary for the rich flora and fauna of the Lekki Peninsula. The company has since provided annual funding for the management of the centre.[1][2][3]

To start the conservation project, three potential areas were surveyed in 1987 by NCF technical team in partnership with the defunct Lagos State Ministry of Agriculture and Cooperative. Thereafter, Lekki area was chosen to establish the demonstration site for the conservation project. Locating the conservation project on Lekki Peninsula informed the name of the project – Lekki Conservation Centre. The centre was established by the Nigerian Conservation Foundation to protect the wildlife and mangrove forests of Nigeria's South-West coastline from the threat of urban development.[4]